Maximum size of input files

questions concerning analysis/theory using program MARK

Maximum size of input files

Postby AndrewMacColl » Fri Mar 20, 2009 10:47 am

Dear All
I am a new user of MARK. I have some large datasets on recapture of ringed (banded!) passerines using mistnets (1000's of individuals and 100's of trapping seesion). I would like to be able to analyse patterns of survival from these datasets, but MARK crashes if the input dataset is more than about 300 individuals and about 50 trapping sessions. I cannot believe that the program cannot handle larger datasets. What am I doing wrong? I am running MARK in Windows XP on a laptop with 2Gb of RAM.
Thanks
Andrew
AndrewMacColl
 
Posts: 1
Joined: Fri Mar 20, 2009 5:36 am
Location: Nottingham UK

Postby Jochen » Mon Mar 23, 2009 2:56 am

Andrew,
if you do not want to include many individual covariates you should use the summary input format as described in the book. That works fine with thousands of individuals (but I never tried >50 trapping occasions).
Good luck!
Jochen
Jochen
 
Posts: 26
Joined: Fri Nov 17, 2006 12:04 pm
Location: Germany

Postby kdecollibus » Mon Mar 23, 2009 5:57 pm

What summary input format are you referring to? Do you have a page number?

-Karin
kdecollibus
 
Posts: 7
Joined: Mon Apr 24, 2006 3:14 am
Location: Long Beach, CA

Postby cooch » Mon Mar 23, 2009 6:31 pm

kdecollibus wrote:What summary input format are you referring to? Do you have a page number?

-Karin


Chapter 2 - data formatting chapter. On or near bottom of p. 3, as I recall.
cooch
 
Posts: 1654
Joined: Thu May 15, 2003 4:11 pm
Location: Cornell University

Re: Maximum size of input files

Postby cooch » Mon Mar 23, 2009 6:34 pm

AndrewMacColl wrote:Dear All
I am a new user of MARK. I have some large datasets on recapture of ringed (banded!) passerines using mistnets (1000's of individuals and 100's of trapping seesion). I would like to be able to analyse patterns of survival from these datasets, but MARK crashes if the input dataset is more than about 300 individuals and about 50 trapping sessions. I cannot believe that the program cannot handle larger datasets. What am I doing wrong? I am running MARK in Windows XP on a laptop with 2Gb of RAM.
Thanks
Andrew


Can't ay without looking at the files, and MARK can handle very large problems, but 2 Gb of RAM is not necessarily a lot for high-dimensional problem. Windows is not a great operating system for memory use - you can use at most 3.5 Gb of addressable RAM (on a machine with 4 Gb installed). With 2 Gb installed, you're actually addressing about 1.5 or so (the difference is the amount of RAM reserved for Windows system use).
cooch
 
Posts: 1654
Joined: Thu May 15, 2003 4:11 pm
Location: Cornell University


Return to analysis help

Who is online

Users browsing this forum: Google [Bot], Majestic-12 [Bot] and 1 guest