Problems importing RMark project into MARK

posts related to the RMark library, which may not be of general interest to users of 'classic' MARK

Problems importing RMark project into MARK

Postby gstauffer » Mon Jun 28, 2010 3:16 pm

I have run into three problems importing RMark models to MARK.

I ran an ORDMS project in RMark with 29 primary periods, 189 secondary periods (total) and quite a bit of age and time variation. For a GOF test I wanted to estimate c-hat in MARK, so I re-analyzed the data set as a Multistrata analysis treating the secondary periods as primary periods and fixing parameters as necessary (see Converse et al. 2009, Auk 126:77-88.) I exported from RMark using the export.MARK() function, but when I try to import into MARK, MARK simply closes without explanation, after a few seconds. However, it does create a database to hold results, and I can open it – it just remains empty, and when I open it I get the message “No output is stored in the Results Database.”
Also, the top of the results browser says “ResultsBrowser: Multi-state with Live Recaptures c-hat=5450.0000000”.
5450 is the number encounter histories in my input file!

Is this analysis simply to big to import into MARK, or is there something else I am missing (i.e. maybe I set something up incorrectly)? And why the odd number for c-hat? It doesn’t seem to matter if I specify c-hat in the export argument.

Going on the assumption that perhaps it is simply too large for MARK to handle, I tried an analogous MS model where I collapsed all the secondary periods (so just 29 years, no RD structure). Again, this model exported just fine from RMark, and again it does create a results dbf, but this time, I get the following lengthy error message:

Error Code: 11 [ ]
Subsystem: BASE
Description: Dynamic Memory Low
CallStack:
DISPLAY_RESULTS:REDODELTAAIC (Line: 19)
MYTOPAPPWIN:APPENDOUTPUT (Line: 115)
MYTOPAPPWIN:FILENEWRMARK (Line: 295)
APP:START (Line: 815)
START (Line: 6)

When I click OK on this error message MARK freezes up, and I must kill it. Does this mean I don’t have enough computer memory to complete the RMark import (I have 4 GB)? When I attempt to open the project, I get a similar error.

I was curious if I could import one of the ORDMS models. Again the export went fine, but trying the import into MARK generated the following: “Number of groups specified <1”. There is one group specified in RMark, so I am at a loss to explain why this message appears or how to make sure it does not.

Any insights would be appreciated.

Thanks,
Glenn
gstauffer
 
Posts: 17
Joined: Thu Sep 03, 2009 11:51 am

Return to RMark

Who is online

Users browsing this forum: No registered users and 1 guest

cron