constant survivor wrote:1.) Maybe not that important here, just for info: when running the calc_mean.inp dataset (exercise data), I got slightly different estimates as written in the book. My book version is the 19th edition...
I believe that was corrected in the 20th edition (you should always check against the online version of a chapter, since it is always more recent than a printed version).
2.) If I got it right, I should use the variance components approach as described in the side bar of section 6.15. Which model should I use (i.e. retrieve before doing the variance component estimation) ? Should it always be phi(t)p(.)? Because obviously the outcome differs when for example phi(t)p(t) is used.
I think phi(t) is fixed in this regard (?) but what about p?
In general, you should use phi(t)p(t). Applying a constraint to (say) p (say, p(.)) also implicitly constrains the phi(t) shrinkage estimates, biasing them slightly relative to 'truth'.
3.) How to obtain mean values for males and females separately?
Time to start reading Appendix D. Example described in section D.4.3 is largely equivalent. It does presume some familiarity with the design matrix, though.